Polaris
User's guide
Quick Start for Users
Tasks
Config Files
Suites
Mesh component
Ocean component
Sea ice component
Machines
Developer's guide
Quick Start for Developers
Overview
Command-line interface
Organization of Tasks
E3SM initial condition (e3sm/init) component
Mesh component
Ocean component
Sea ice component
Framework
Machines
Troubleshooting
Documentation
Building the Documentation
Previewing the Documentation
How Conda and Spack Work Together in Polaris
Updating Conda Dependencies
Updating Shared Spack Environments
API reference
Design Documents
Tutorials
Developer Tutorial: Adding a New Category of Tasks
Glossary
Glossary
Polaris
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
Y
_
__init__() (polaris.Component method)
(polaris.config.PolarisConfigParser method)
(polaris.mesh.IcosahedralMeshStep method)
(polaris.mesh.QuasiUniformSphericalMeshStep method)
(polaris.mesh.spherical.SphericalBaseStep method)
(polaris.ModelStep method)
(polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.ocean.convergence.forward.ConvergenceForward method)
(polaris.ocean.convergence.spherical.SphericalConvergenceForward method)
(polaris.ocean.ice_shelf.IceShelfTask method)
(polaris.ocean.ice_shelf.SshAdjustment method)
(polaris.ocean.ice_shelf.SshForward method)
(polaris.ocean.model.OceanIOStep method)
(polaris.ocean.model.OceanModelStep method)
(polaris.parallel.login.LoginSystem method)
(polaris.parallel.pbs.PbsSystem method)
(polaris.parallel.single_node.SingleNodeSystem method)
(polaris.parallel.slurm.SlurmSystem method)
(polaris.parallel.system.ParallelSystem method)
(polaris.remap.MappingFileStep method)
(polaris.Step method)
(polaris.Task method)
(polaris.tasks.e3sm.init.topo.combine.CombineStep method)
(polaris.tasks.e3sm.init.topo.combine.CombineTask method)
(polaris.tasks.e3sm.init.topo.combine.VizCombinedStep method)
(polaris.tasks.e3sm.init.topo.remap.MaskTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.RemapTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.RemapTopoTask method)
(polaris.tasks.e3sm.init.topo.remap.VizRemappedTopoStep method)
(polaris.tasks.mesh.base.BaseMeshTask method)
(polaris.tasks.ocean.baroclinic_channel.decomp.Decomp method)
(polaris.tasks.ocean.baroclinic_channel.default.Default method)
(polaris.tasks.ocean.baroclinic_channel.forward.Forward method)
(polaris.tasks.ocean.baroclinic_channel.init.Init method)
(polaris.tasks.ocean.baroclinic_channel.restart.Restart method)
(polaris.tasks.ocean.baroclinic_channel.restart.restart_step.RestartStep method)
(polaris.tasks.ocean.baroclinic_channel.rpe.analysis.Analysis method)
(polaris.tasks.ocean.baroclinic_channel.rpe.Rpe method)
(polaris.tasks.ocean.baroclinic_channel.threads.Threads method)
(polaris.tasks.ocean.baroclinic_channel.validate.Validate method)
(polaris.tasks.ocean.baroclinic_channel.viz.Viz method)
(polaris.tasks.ocean.barotropic_gyre.analysis.Analysis method)
(polaris.tasks.ocean.barotropic_gyre.BarotropicGyre method)
(polaris.tasks.ocean.barotropic_gyre.forward.Forward method)
(polaris.tasks.ocean.barotropic_gyre.init.Init method)
(polaris.tasks.ocean.cosine_bell.analysis.Analysis method)
(polaris.tasks.ocean.cosine_bell.CosineBell method)
(polaris.tasks.ocean.cosine_bell.decomp.Decomp method)
(polaris.tasks.ocean.cosine_bell.forward.Forward method)
(polaris.tasks.ocean.cosine_bell.init.Init method)
(polaris.tasks.ocean.cosine_bell.restart.Restart method)
(polaris.tasks.ocean.cosine_bell.restart.RestartStep method)
(polaris.tasks.ocean.cosine_bell.validate.Validate method)
(polaris.tasks.ocean.cosine_bell.viz.Viz method)
(polaris.tasks.ocean.geostrophic.analysis.Analysis method)
(polaris.tasks.ocean.geostrophic.forward.Forward method)
(polaris.tasks.ocean.geostrophic.Geostrophic method)
(polaris.tasks.ocean.geostrophic.init.Init method)
(polaris.tasks.ocean.geostrophic.viz.Viz method)
(polaris.tasks.ocean.ice_shelf_2d.default.Default method)
(polaris.tasks.ocean.ice_shelf_2d.forward.Forward method)
(polaris.tasks.ocean.ice_shelf_2d.init.Init method)
(polaris.tasks.ocean.ice_shelf_2d.validate.Validate method)
(polaris.tasks.ocean.ice_shelf_2d.viz.Viz method)
(polaris.tasks.ocean.inertial_gravity_wave.analysis.Analysis method)
(polaris.tasks.ocean.inertial_gravity_wave.exact_solution.ExactSolution method)
(polaris.tasks.ocean.inertial_gravity_wave.forward.Forward method)
(polaris.tasks.ocean.inertial_gravity_wave.InertialGravityWave method)
(polaris.tasks.ocean.inertial_gravity_wave.init.Init method)
(polaris.tasks.ocean.inertial_gravity_wave.viz.Viz method)
(polaris.tasks.ocean.internal_wave.default.Default method)
(polaris.tasks.ocean.internal_wave.forward.Forward method)
(polaris.tasks.ocean.internal_wave.init.Init method)
(polaris.tasks.ocean.internal_wave.rpe.analysis.Analysis method)
(polaris.tasks.ocean.internal_wave.rpe.Rpe method)
(polaris.tasks.ocean.internal_wave.viz.Viz method)
(polaris.tasks.ocean.manufactured_solution.analysis.Analysis method)
(polaris.tasks.ocean.manufactured_solution.exact_solution.ExactSolution method)
(polaris.tasks.ocean.manufactured_solution.forward.Forward method)
(polaris.tasks.ocean.manufactured_solution.init.Init method)
(polaris.tasks.ocean.manufactured_solution.ManufacturedSolution method)
(polaris.tasks.ocean.manufactured_solution.viz.Viz method)
(polaris.tasks.ocean.merry_go_round.analysis.Analysis method)
(polaris.tasks.ocean.merry_go_round.default.Default method)
(polaris.tasks.ocean.merry_go_round.default.viz.Viz method)
(polaris.tasks.ocean.merry_go_round.forward.Forward method)
(polaris.tasks.ocean.merry_go_round.init.Init method)
(polaris.tasks.ocean.merry_go_round.viz.Viz method)
(polaris.tasks.ocean.Ocean method)
(polaris.tasks.ocean.overflow.default.Default method)
(polaris.tasks.ocean.overflow.forward.Forward method)
(polaris.tasks.ocean.overflow.init.Init method)
(polaris.tasks.ocean.overflow.rpe.analysis.Analysis method)
(polaris.tasks.ocean.overflow.rpe.Rpe method)
(polaris.tasks.ocean.overflow.viz.Viz method)
(polaris.tasks.ocean.single_column.cvmix.CVMix method)
(polaris.tasks.ocean.single_column.ekman.analysis.Analysis method)
(polaris.tasks.ocean.single_column.ekman.Ekman method)
(polaris.tasks.ocean.single_column.forward.Forward method)
(polaris.tasks.ocean.single_column.ideal_age.IdealAge method)
(polaris.tasks.ocean.single_column.inertial.analysis.Analysis method)
(polaris.tasks.ocean.single_column.inertial.Inertial method)
(polaris.tasks.ocean.single_column.init.Init method)
(polaris.tasks.ocean.single_column.viz.Viz method)
(polaris.tasks.ocean.sphere_transport.analysis.Analysis method)
(polaris.tasks.ocean.sphere_transport.filament_analysis.FilamentAnalysis method)
(polaris.tasks.ocean.sphere_transport.forward.Forward method)
(polaris.tasks.ocean.sphere_transport.init.Init method)
(polaris.tasks.ocean.sphere_transport.mixing_analysis.MixingAnalysis method)
(polaris.tasks.ocean.sphere_transport.SphereTransport method)
(polaris.tasks.ocean.sphere_transport.viz.Viz method)
(polaris.tasks.seaice.single_column.exact_restart.ExactRestart method)
(polaris.tasks.seaice.single_column.exact_restart.validate.Validate method)
(polaris.tasks.seaice.single_column.forward.Forward method)
(polaris.tasks.seaice.single_column.standard_physics.StandardPhysics method)
(polaris.tasks.seaice.single_column.standard_physics.viz.Viz method)
(polaris.yaml.PolarisYaml method)
A
add_baroclinic_channel_tasks() (in module polaris.tasks.ocean.baroclinic_channel)
add_barotropic_gyre_tasks() (in module polaris.tasks.ocean.barotropic_gyre)
add_base_mesh_tasks() (in module polaris.tasks.mesh.base)
add_config() (polaris.Component method)
add_cosine_bell_tasks() (in module polaris.tasks.ocean.cosine_bell)
add_dependency() (polaris.Step method)
add_e3sm_init_tasks() (in module polaris.tasks.e3sm.init.add_tasks)
add_geostrophic_tasks() (in module polaris.tasks.ocean.geostrophic)
add_ice_shelf_2d_tasks() (in module polaris.tasks.ocean.ice_shelf_2d)
add_inertial_gravity_wave_tasks() (in module polaris.tasks.ocean.inertial_gravity_wave)
add_input_file() (polaris.Step method)
add_internal_wave_tasks() (in module polaris.tasks.ocean.internal_wave)
add_manufactured_solution_tasks() (in module polaris.tasks.ocean.manufactured_solution)
add_merry_go_round_tasks() (in module polaris.tasks.ocean.merry_go_round)
add_mesh_tasks() (in module polaris.tasks.mesh.add_tasks)
add_model_config_options() (polaris.ModelStep method)
add_namelist_file() (polaris.ModelStep method)
add_ocean_tasks() (in module polaris.tasks.ocean.add_tasks)
add_output_file() (polaris.Step method)
add_overflow_tasks() (in module polaris.tasks.ocean.overflow)
add_seaice_tasks() (in module polaris.tasks.seaice.add_tasks)
add_single_column_tasks() (in module polaris.tasks.ocean.single_column)
(in module polaris.tasks.seaice.single_column)
add_sphere_transport_tasks() (in module polaris.tasks.ocean.sphere_transport)
add_step() (polaris.Component method)
(polaris.Task method)
add_streams_file() (polaris.ModelStep method)
add_task() (polaris.Component method)
add_uniform_spherical_base_mesh_step() (in module polaris.mesh.base)
add_yaml_file() (polaris.ModelStep method)
alter_bottom_depth() (in module polaris.ocean.vertical.partial_cells)
alter_ssh() (in module polaris.ocean.vertical.partial_cells)
Analysis (class in polaris.tasks.ocean.baroclinic_channel.rpe.analysis)
(class in polaris.tasks.ocean.barotropic_gyre.analysis)
(class in polaris.tasks.ocean.cosine_bell.analysis)
(class in polaris.tasks.ocean.geostrophic.analysis)
(class in polaris.tasks.ocean.inertial_gravity_wave.analysis)
(class in polaris.tasks.ocean.internal_wave.rpe.analysis)
(class in polaris.tasks.ocean.manufactured_solution.analysis)
(class in polaris.tasks.ocean.merry_go_round.analysis)
(class in polaris.tasks.ocean.overflow.rpe.analysis)
(class in polaris.tasks.ocean.single_column.ekman.analysis)
(class in polaris.tasks.ocean.single_column.inertial.analysis)
(class in polaris.tasks.ocean.sphere_transport.analysis)
area_for_field() (in module polaris.mpas)
B
BarotropicGyre (class in polaris.tasks.ocean.barotropic_gyre)
BaseMeshTask (class in polaris.tasks.mesh.base)
build_cell_width_lat_lon() (polaris.mesh.QuasiUniformSphericalMeshStep method)
build_subdivisions_cell_width_lat_lon() (polaris.mesh.IcosahedralMeshStep method)
C
cell_mask_to_edge_mask() (in module polaris.mpas)
CombineStep (class in polaris.tasks.e3sm.init.topo.combine)
CombineTask (class in polaris.tasks.e3sm.init.topo.combine)
compare_variables() (in module polaris.validate)
complete_step_run() (in module polaris.run)
Component (class in polaris)
compute_cell_count() (polaris.ocean.convergence.forward.ConvergenceForward method)
(polaris.ocean.convergence.spherical.SphericalConvergenceForward method)
(polaris.ocean.ice_shelf.SshForward method)
(polaris.ocean.model.OceanModelStep method)
(polaris.tasks.ocean.baroclinic_channel.forward.Forward method)
(polaris.tasks.ocean.barotropic_gyre.forward.Forward method)
(polaris.tasks.ocean.ice_shelf_2d.forward.Forward method)
(polaris.tasks.ocean.inertial_gravity_wave.forward.Forward method)
(polaris.tasks.ocean.internal_wave.forward.Forward method)
(polaris.tasks.ocean.manufactured_solution.forward.Forward method)
(polaris.tasks.ocean.merry_go_round.forward.Forward method)
(polaris.tasks.ocean.overflow.forward.Forward method)
compute_error() (polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.tasks.ocean.barotropic_gyre.analysis.Analysis method)
compute_max_time_step() (in module polaris.tasks.ocean.barotropic_gyre.forward)
compute_min_max_level_cell() (in module polaris.ocean.vertical.zlevel)
compute_planar_hex_nx_ny() (in module polaris.mesh.planar)
compute_rpe() (in module polaris.ocean.rpe)
compute_z_level_layer_thickness() (in module polaris.ocean.vertical.zlevel)
compute_z_level_resting_thickness() (in module polaris.ocean.vertical.zlevel)
configure() (polaris.Task method)
(polaris.tasks.ocean.baroclinic_channel.rpe.Rpe method)
(polaris.tasks.ocean.cosine_bell.CosineBell method)
(polaris.tasks.ocean.geostrophic.Geostrophic method)
(polaris.tasks.ocean.internal_wave.rpe.Rpe method)
(polaris.tasks.ocean.overflow.rpe.Rpe method)
(polaris.tasks.ocean.sphere_transport.SphereTransport method)
constrain_resources() (polaris.ocean.model.OceanModelStep method)
(polaris.Step method)
(polaris.tasks.e3sm.init.topo.combine.CombineStep method)
(polaris.tasks.e3sm.init.topo.remap.MaskTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.RemapTopoStep method)
convergence_parameters() (polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.tasks.ocean.sphere_transport.analysis.Analysis method)
ConvergenceAnalysis (class in polaris.ocean.convergence.analysis)
ConvergenceForward (class in polaris.ocean.convergence.forward)
cosine_bell() (in module polaris.tasks.ocean.cosine_bell.init)
CosineBell (class in polaris.tasks.ocean.cosine_bell)
CVMix (class in polaris.tasks.ocean.single_column.cvmix)
D
Decomp (class in polaris.tasks.ocean.baroclinic_channel.decomp)
(class in polaris.tasks.ocean.cosine_bell.decomp)
Default (class in polaris.tasks.ocean.baroclinic_channel.default)
(class in polaris.tasks.ocean.ice_shelf_2d.default)
(class in polaris.tasks.ocean.internal_wave.default)
(class in polaris.tasks.ocean.merry_go_round.default)
(class in polaris.tasks.ocean.overflow.default)
define_masks() (polaris.tasks.e3sm.init.topo.remap.MaskTopoStep method)
define_smoothing() (polaris.tasks.e3sm.init.topo.remap.RemapTopoStep method)
download() (in module polaris.io)
dynamic_model_config() (polaris.ModelStep method)
(polaris.ocean.convergence.forward.ConvergenceForward method)
(polaris.ocean.ice_shelf.SshForward method)
(polaris.tasks.ocean.baroclinic_channel.forward.Forward method)
(polaris.tasks.ocean.baroclinic_channel.restart.restart_step.RestartStep method)
(polaris.tasks.ocean.barotropic_gyre.forward.Forward method)
(polaris.tasks.ocean.cosine_bell.restart.RestartStep method)
(polaris.tasks.ocean.ice_shelf_2d.forward.Forward method)
(polaris.tasks.ocean.internal_wave.forward.Forward method)
(polaris.tasks.ocean.overflow.forward.Forward method)
(polaris.tasks.ocean.single_column.forward.Forward method)
E
Ekman (class in polaris.tasks.ocean.single_column.ekman)
exact_solution() (polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.tasks.ocean.barotropic_gyre.analysis.Analysis method)
(polaris.tasks.ocean.cosine_bell.analysis.Analysis method)
(polaris.tasks.ocean.geostrophic.analysis.Analysis method)
(polaris.tasks.ocean.inertial_gravity_wave.analysis.Analysis method)
(polaris.tasks.ocean.manufactured_solution.analysis.Analysis method)
ExactRestart (class in polaris.tasks.seaice.single_column.exact_restart)
ExactSolution (class in polaris.tasks.ocean.inertial_gravity_wave.exact_solution)
(class in polaris.tasks.ocean.manufactured_solution.exact_solution)
F
FilamentAnalysis (class in polaris.tasks.ocean.sphere_transport.filament_analysis)
Forward (class in polaris.tasks.ocean.baroclinic_channel.forward)
(class in polaris.tasks.ocean.barotropic_gyre.forward)
(class in polaris.tasks.ocean.cosine_bell.forward)
(class in polaris.tasks.ocean.geostrophic.forward)
(class in polaris.tasks.ocean.ice_shelf_2d.forward)
(class in polaris.tasks.ocean.inertial_gravity_wave.forward)
(class in polaris.tasks.ocean.internal_wave.forward)
(class in polaris.tasks.ocean.manufactured_solution.forward)
(class in polaris.tasks.ocean.merry_go_round.forward)
(class in polaris.tasks.ocean.overflow.forward)
(class in polaris.tasks.ocean.single_column.forward)
(class in polaris.tasks.ocean.sphere_transport.forward)
(class in polaris.tasks.seaice.single_column.forward)
G
generate_1d_grid() (in module polaris.ocean.vertical.grid_1d)
Geostrophic (class in polaris.tasks.ocean.geostrophic)
get_available_parallel_resources() (in module polaris.parallel)
get_base_mesh_steps() (in module polaris.mesh.base)
get_cell_width() (polaris.mesh.IcosahedralMeshStep static method)
get_or_create_shared_step() (polaris.Component method)
get_output_field() (polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.tasks.ocean.geostrophic.analysis.Analysis method)
get_parallel_command() (in module polaris.parallel)
get_pbs_options() (in module polaris.job)
get_resolution_for_task() (in module polaris.ocean.convergence)
get_slurm_options() (in module polaris.job)
get_subdir() (polaris.tasks.e3sm.init.topo.combine.CombineStep static method)
get_subdivisions() (polaris.mesh.IcosahedralMeshStep static method)
get_time_interval_string() (in module polaris.ocean.model)
get_timestep_for_task() (in module polaris.ocean.convergence)
I
IceShelfTask (class in polaris.ocean.ice_shelf)
IcosahedralMeshStep (class in polaris.mesh)
IdealAge (class in polaris.tasks.ocean.single_column.ideal_age)
Inertial (class in polaris.tasks.ocean.single_column.inertial)
InertialGravityWave (class in polaris.tasks.ocean.inertial_gravity_wave)
ingest() (in module polaris.namelist)
Init (class in polaris.tasks.ocean.baroclinic_channel.init)
(class in polaris.tasks.ocean.barotropic_gyre.init)
(class in polaris.tasks.ocean.cosine_bell.init)
(class in polaris.tasks.ocean.geostrophic.init)
(class in polaris.tasks.ocean.ice_shelf_2d.init)
(class in polaris.tasks.ocean.inertial_gravity_wave.init)
(class in polaris.tasks.ocean.internal_wave.init)
(class in polaris.tasks.ocean.manufactured_solution.init)
(class in polaris.tasks.ocean.merry_go_round.init)
(class in polaris.tasks.ocean.overflow.init)
(class in polaris.tasks.ocean.single_column.init)
(class in polaris.tasks.ocean.sphere_transport.init)
init_sigma_vertical_coord() (in module polaris.ocean.vertical.sigma)
init_vertical_coord() (in module polaris.ocean.vertical)
init_z_level_vertical_coord() (in module polaris.ocean.vertical.zlevel)
init_z_star_vertical_coord() (in module polaris.ocean.vertical.zstar)
L
list_cases() (in module polaris.list)
list_machines() (in module polaris.list)
list_suites() (in module polaris.list)
load_dependencies() (in module polaris.run)
log_method_call() (in module polaris.logging)
LoginSystem (class in polaris.parallel.login)
M
main() (in module polaris.__main__)
main_mpas_to_yaml() (in module polaris.yaml)
make_graph_file() (in module polaris.model_step)
make_jigsaw_mesh() (polaris.mesh.IcosahedralMeshStep method)
(polaris.mesh.QuasiUniformSphericalMeshStep method)
ManufacturedSolution (class in polaris.tasks.ocean.manufactured_solution)
map_from_native_model_vars() (polaris.ocean.model.OceanIOStep method)
map_to_native_model_vars() (polaris.ocean.model.OceanIOStep method)
map_yaml_configs() (polaris.ModelStep method)
(polaris.ocean.model.OceanModelStep method)
map_yaml_options() (polaris.ModelStep method)
(polaris.ocean.model.OceanModelStep method)
map_yaml_to_namelist() (polaris.ModelStep method)
MappingFileStep (class in polaris.remap)
MaskTopoStep (class in polaris.tasks.e3sm.init.topo.remap)
MixingAnalysis (class in polaris.tasks.ocean.sphere_transport.mixing_analysis)
ModelStep (class in polaris)
mpas_namelist_and_streams_to_yaml() (in module polaris.yaml)
N
normal_velocity() (polaris.tasks.ocean.inertial_gravity_wave.exact_solution.ExactSolution method)
(polaris.tasks.ocean.manufactured_solution.exact_solution.ExactSolution method)
O
Ocean (class in polaris.tasks.ocean)
OceanIOStep (class in polaris.ocean.model)
OceanModelStep (class in polaris.ocean.model)
open_model_dataset() (polaris.ocean.model.OceanIOStep method)
P
ParallelSystem (class in polaris.parallel.system)
parse_replacements() (in module polaris.namelist)
partition() (polaris.ModelStep method)
PbsSystem (class in polaris.parallel.pbs)
plot_convergence() (polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
plot_global_lat_lon_field() (in module polaris.viz)
plot_global_mpas_field() (in module polaris.viz)
plot_horiz_field() (in module polaris.viz)
PolarisConfigParser (class in polaris.config)
PolarisYaml (class in polaris.yaml)
process_inputs_and_outputs() (polaris.ModelStep method)
Q
QuasiUniformSphericalMeshStep (class in polaris.mesh)
R
read() (in module polaris.streams)
(polaris.yaml.PolarisYaml class method)
RemapTopoStep (class in polaris.tasks.e3sm.init.topo.remap)
RemapTopoTask (class in polaris.tasks.e3sm.init.topo.remap)
remove_step() (polaris.Component method)
(polaris.Task method)
replace() (in module polaris.namelist)
resolution_to_string() (in module polaris.resolution)
Restart (class in polaris.tasks.ocean.baroclinic_channel.restart)
(class in polaris.tasks.ocean.cosine_bell.restart)
RestartStep (class in polaris.tasks.ocean.baroclinic_channel.restart.restart_step)
(class in polaris.tasks.ocean.cosine_bell.restart)
Rpe (class in polaris.tasks.ocean.baroclinic_channel.rpe)
(class in polaris.tasks.ocean.internal_wave.rpe)
(class in polaris.tasks.ocean.overflow.rpe)
run() (polaris.mesh.IcosahedralMeshStep method)
(polaris.mesh.QuasiUniformSphericalMeshStep method)
(polaris.mesh.spherical.SphericalBaseStep method)
(polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.ocean.ice_shelf.SshAdjustment method)
(polaris.remap.MappingFileStep method)
(polaris.Step method)
(polaris.tasks.e3sm.init.topo.combine.CombineStep method)
(polaris.tasks.e3sm.init.topo.combine.VizCombinedStep method)
(polaris.tasks.e3sm.init.topo.remap.MaskTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.RemapTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.VizRemappedTopoStep method)
(polaris.tasks.ocean.baroclinic_channel.init.Init method)
(polaris.tasks.ocean.baroclinic_channel.rpe.analysis.Analysis method)
(polaris.tasks.ocean.baroclinic_channel.validate.Validate method)
(polaris.tasks.ocean.baroclinic_channel.viz.Viz method)
(polaris.tasks.ocean.barotropic_gyre.analysis.Analysis method)
(polaris.tasks.ocean.barotropic_gyre.init.Init method)
(polaris.tasks.ocean.cosine_bell.init.Init method)
(polaris.tasks.ocean.cosine_bell.validate.Validate method)
(polaris.tasks.ocean.cosine_bell.viz.Viz method)
(polaris.tasks.ocean.geostrophic.init.Init method)
(polaris.tasks.ocean.geostrophic.viz.Viz method)
(polaris.tasks.ocean.ice_shelf_2d.init.Init method)
(polaris.tasks.ocean.ice_shelf_2d.validate.Validate method)
(polaris.tasks.ocean.ice_shelf_2d.viz.Viz method)
(polaris.tasks.ocean.inertial_gravity_wave.init.Init method)
(polaris.tasks.ocean.inertial_gravity_wave.viz.Viz method)
(polaris.tasks.ocean.internal_wave.init.Init method)
(polaris.tasks.ocean.internal_wave.rpe.analysis.Analysis method)
(polaris.tasks.ocean.internal_wave.viz.Viz method)
(polaris.tasks.ocean.manufactured_solution.init.Init method)
(polaris.tasks.ocean.manufactured_solution.viz.Viz method)
(polaris.tasks.ocean.merry_go_round.default.viz.Viz method)
(polaris.tasks.ocean.merry_go_round.init.Init method)
(polaris.tasks.ocean.merry_go_round.viz.Viz method)
(polaris.tasks.ocean.overflow.init.Init method)
(polaris.tasks.ocean.overflow.rpe.analysis.Analysis method)
(polaris.tasks.ocean.overflow.viz.Viz method)
(polaris.tasks.ocean.single_column.ekman.analysis.Analysis method)
(polaris.tasks.ocean.single_column.inertial.analysis.Analysis method)
(polaris.tasks.ocean.single_column.init.Init method)
(polaris.tasks.ocean.single_column.viz.Viz method)
(polaris.tasks.ocean.sphere_transport.filament_analysis.FilamentAnalysis method)
(polaris.tasks.ocean.sphere_transport.init.Init method)
(polaris.tasks.ocean.sphere_transport.mixing_analysis.MixingAnalysis method)
(polaris.tasks.ocean.sphere_transport.viz.Viz method)
(polaris.tasks.seaice.single_column.exact_restart.validate.Validate method)
(polaris.tasks.seaice.single_column.standard_physics.viz.Viz method)
run_command() (in module polaris.parallel)
run_single_step() (in module polaris.run.serial)
run_tasks() (in module polaris.run.serial)
runtime_setup() (polaris.ModelStep method)
(polaris.Step method)
S
save_and_plot_cell_width() (polaris.mesh.spherical.SphericalBaseStep method)
set_cores_per_node() (in module polaris.parallel)
set_model_resources() (polaris.ModelStep method)
set_resources() (polaris.Step method)
set_shared_config() (polaris.Step method)
(polaris.Task method)
setup() (polaris.config.PolarisConfigParser method)
(polaris.mesh.IcosahedralMeshStep method)
(polaris.mesh.QuasiUniformSphericalMeshStep method)
(polaris.mesh.spherical.SphericalBaseStep method)
(polaris.ModelStep method)
(polaris.ocean.convergence.analysis.ConvergenceAnalysis method)
(polaris.ocean.model.OceanIOStep method)
(polaris.ocean.model.OceanModelStep method)
(polaris.Step method)
(polaris.tasks.e3sm.init.topo.combine.CombineStep method)
(polaris.tasks.e3sm.init.topo.combine.VizCombinedStep method)
(polaris.tasks.e3sm.init.topo.remap.MaskTopoStep method)
(polaris.tasks.e3sm.init.topo.remap.RemapTopoStep method)
(polaris.tasks.ocean.baroclinic_channel.init.Init method)
(polaris.tasks.ocean.baroclinic_channel.rpe.analysis.Analysis method)
(polaris.tasks.ocean.barotropic_gyre.init.Init method)
(polaris.tasks.ocean.manufactured_solution.init.Init method)
(polaris.tasks.ocean.merry_go_round.default.viz.Viz method)
(polaris.tasks.ocean.merry_go_round.init.Init method)
(polaris.tasks.ocean.merry_go_round.viz.Viz method)
(polaris.tasks.ocean.overflow.init.Init method)
setup_config() (in module polaris.run)
setup_ssh_adjustment_steps() (polaris.ocean.ice_shelf.IceShelfTask method)
setup_suite() (in module polaris.suite)
setup_task() (in module polaris.setup)
setup_tasks() (in module polaris.setup)
SingleNodeSystem (class in polaris.parallel.single_node)
SlurmSystem (class in polaris.parallel.slurm)
SphereTransport (class in polaris.tasks.ocean.sphere_transport)
SphericalBaseStep (class in polaris.mesh.spherical)
SphericalConvergenceForward (class in polaris.ocean.convergence.spherical)
ssh() (polaris.tasks.ocean.inertial_gravity_wave.exact_solution.ExactSolution method)
(polaris.tasks.ocean.manufactured_solution.exact_solution.ExactSolution method)
SshAdjustment (class in polaris.ocean.ice_shelf)
SshForward (class in polaris.ocean.ice_shelf)
StandardPhysics (class in polaris.tasks.seaice.single_column.standard_physics)
Step (class in polaris)
symlink() (in module polaris.io)
T
Task (class in polaris)
Threads (class in polaris.tasks.ocean.baroclinic_channel.threads)
time_index_from_xtime() (in module polaris.mpas)
U
unpickle_suite() (in module polaris.run)
update() (polaris.yaml.PolarisYaml method)
update_cache() (in module polaris.cache)
update_defaults() (in module polaris.streams)
update_layer_thickness() (in module polaris.ocean.vertical)
update_namelist_pio() (polaris.ModelStep method)
update_permissions() (in module polaris.io)
update_sigma_layer_thickness() (in module polaris.ocean.vertical.sigma)
update_tree() (in module polaris.streams)
update_z_level_layer_thickness() (in module polaris.ocean.vertical.zlevel)
update_z_star_layer_thickness() (in module polaris.ocean.vertical.zstar)
use_mplstyle() (in module polaris.viz)
V
Validate (class in polaris.tasks.ocean.baroclinic_channel.validate)
(class in polaris.tasks.ocean.cosine_bell.validate)
(class in polaris.tasks.ocean.ice_shelf_2d.validate)
(class in polaris.tasks.seaice.single_column.exact_restart.validate)
validate_baselines() (polaris.Step method)
Viz (class in polaris.tasks.ocean.baroclinic_channel.viz)
(class in polaris.tasks.ocean.cosine_bell.viz)
(class in polaris.tasks.ocean.geostrophic.viz)
(class in polaris.tasks.ocean.ice_shelf_2d.viz)
(class in polaris.tasks.ocean.inertial_gravity_wave.viz)
(class in polaris.tasks.ocean.internal_wave.viz)
(class in polaris.tasks.ocean.manufactured_solution.viz)
(class in polaris.tasks.ocean.merry_go_round.default.viz)
(class in polaris.tasks.ocean.merry_go_round.viz)
(class in polaris.tasks.ocean.overflow.viz)
(class in polaris.tasks.ocean.single_column.viz)
(class in polaris.tasks.ocean.sphere_transport.viz)
(class in polaris.tasks.seaice.single_column.standard_physics.viz)
VizCombinedStep (class in polaris.tasks.e3sm.init.topo.combine)
VizRemappedTopoStep (class in polaris.tasks.e3sm.init.topo.remap)
W
write() (in module polaris.namelist)
(in module polaris.provenance)
(in module polaris.streams)
(polaris.yaml.PolarisYaml method)
write_1d_grid() (in module polaris.ocean.vertical.grid_1d)
write_job_script() (in module polaris.job)
write_model_dataset() (polaris.ocean.model.OceanIOStep method)
Y
yaml_to_mpas_streams() (in module polaris.yaml)