import cmocean # noqa: F401
import numpy as np
import xarray as xr
from mpas_tools.ocean.viz.transect import compute_transect, plot_transect
from polaris import Step
from polaris.mpas import cell_mask_to_edge_mask
from polaris.viz import plot_horiz_field
[docs]
class Viz(Step):
"""
A step for plotting the results of a series of baroclinic channel RPE runs
"""
[docs]
def __init__(self, component, indir):
"""
Create the step
Parameters
----------
component : polaris.Component
The component the step belongs to
indir : str
the directory the step is in, to which ``name`` will be appended
"""
super().__init__(component=component, name='viz', indir=indir)
self.add_input_file(
filename='mesh.nc', target='../../init/culled_mesh.nc'
)
self.add_input_file(
filename='init.nc', target='../../init/initial_state.nc'
)
self.add_input_file(
filename='output.nc', target='../forward/output.nc'
)
[docs]
def run(self):
"""
Run this step of the task
"""
ds_mesh = xr.load_dataset('mesh.nc')
ds_init = xr.load_dataset('init.nc')
ds = xr.load_dataset('output.nc')
t_index = ds.sizes['Time'] - 1
cell_mask = ds_init.maxLevelCell >= 1
edge_mask = cell_mask_to_edge_mask(ds_init, cell_mask)
max_velocity = np.max(np.abs(ds.normalVelocity.values))
plot_horiz_field(
ds_mesh,
ds['normalVelocity'],
'final_normalVelocity.png',
t_index=t_index,
vmin=-max_velocity,
vmax=max_velocity,
cmap='cmo.balance',
show_patch_edges=True,
field_mask=edge_mask,
)
y_min = ds_mesh.yVertex.min().values
y_max = ds_mesh.yVertex.max().values
x_mid = ds_mesh.xCell.median().values
y = xr.DataArray(data=np.linspace(y_min, y_max, 2), dims=('nPoints',))
x = x_mid * xr.ones_like(y)
ds_transect = compute_transect(
x=x,
y=y,
ds_horiz_mesh=ds_mesh,
layer_thickness=ds.layerThickness.isel(Time=t_index),
bottom_depth=ds_init.bottomDepth,
min_level_cell=ds_init.minLevelCell - 1,
max_level_cell=ds_init.maxLevelCell - 1,
spherical=False,
)
field_name = 'temperature'
vmin = ds[field_name].min().values
vmax = ds[field_name].max().values
mpas_field = ds[field_name].isel(Time=t_index)
plot_transect(
ds_transect=ds_transect,
mpas_field=mpas_field,
title=f'{field_name} at x={1e-3 * x_mid:.1f} km',
out_filename=f'final_{field_name}_section.png',
vmin=vmin,
vmax=vmax,
cmap='cmo.thermal',
colorbar_label=r'$^\circ$C',
color_start_and_end=True,
)
plot_horiz_field(
ds_mesh,
ds['temperature'],
'final_temperature.png',
t_index=t_index,
vmin=vmin,
vmax=vmax,
cmap='cmo.thermal',
field_mask=cell_mask,
transect_x=x,
transect_y=y,
)